Table 1 Characteristics of Rice HKT family gene
From: In silico approach to investigate the potential HKT gene responsive to salt stress in rice
Transcript ID | Gene name | Chr.no | Location Start–End | Strand | CDS (bp) | Protein length (aa) | Molecular weight (Da) | pI | Gravy | Insta-bility index | Intro/Exons no | SL | Transme-mbrane topology |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LOC_Os04g51820.1 | OsHKT1;1 | 4 | 30724244–30727084 | r | 1572 | 523 | 58872.94 | 9.17 | 0.283 | 39.52 | 1:02 | PM | 8 |
LOC_Os02g07830.1 | OsHKT1;3 | 2 | 4103333–4105657 | f | 1596 | 531 | 59304.53 | 9.41 | 0.28 | 26.94 | 2:03 | PM | 8 |
LOC_Os04g51830.1 | OsHKT1;4 | 4 | 30734183–30739334 | r | 1503 | 500 | 54239.3 | 8.96 | 0.38 | 43.9 | 2:03 | PM | 8 |
LOC_Os01g20160.1 | OsHKT1;5 | 1 | 11458955–11463442 | r | 1665 | 554 | 60137.11 | 8.52 | 0.378 | 40.24 | 2:03 | PM | 8 |
LOC_Os06g48810.1 | OsHKT2;1 | 6 | 29538934–29541219 | r | 1593 | 530 | 59295.08 | 9.43 | 0.506 | 37.45 | 2:03 | PM | 8 |
LOC_Os01g34850.1 | OsHKT2;3 | 1 | 19242042–19243853 | f | 1530 | 509 | 56374.38 | 9.13 | 0.472 | 46.89 | 2:03 | PM | 8 |
LOC_Os06g48800.1 | OsHKT2;4 | 6 | 29534805–29536553 | r | 1530 | 509 | 56116.72 | 8.74 | 0.443 | 45.79 | 2:03 | PM | 8 |
BAB61791.1 (Protein acc. no.) | Po_OsHKT2;2 | - | – | – | 1593 | 530 | 59151.84 | 9.49 | 0.448 | 37.56 | 0:01 | PM | 8 |
AJ506745* (Nucleo. acc. no.) | OsHKT1;2 | - | – | – | 1659 | 549 | 61990.90 | 9.60 | 0.254 | 38.21 | 2:03 | PM | 8 |