Table 3 Resistant genes prediction and annotation for the significant SNP and the suggestive SNPs associated with candidate genes for scab resistance
SNP position | Gene | R-Protein possibility | TM | SP | Distance | Domain 1 | Domain 2 | Domain 3 |
|---|---|---|---|---|---|---|---|---|
% | Mb | |||||||
S1_6571566 | PHAVU_009G098100g | 0.8839421 | 0 | 0 | NaN | TamB (PF04357.17) | TamB (PF04357.17) | TamB (PF04357.17) |
PHAVU_001G0558000g | 0.7223124 | 1 | 0 | NaN | TamB (PF04357.17) | TamB (PF04357.17) | TamB (PF04357.17) | |
PHAVU_009G098800g | 0.6023959 | 9 | 0 | NaN | MFS_MOT1 (PF16983.9) | MFS_MOT1 (PF16983.9) | ||
PHAVU_001G055900g | 0.5471035 | 2 | 0 | 0.002 | EPL1 (PF10513.13) | EPL1 (PF10513.13) | EPL1 (PF10513.13) | |
S1_6231746 | PHAVU_001G054500g | 0.8549359 | 1 | 3 | 0.201 | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) |
PHAVU_001G054500g | 0.7883806 | 1 | Y | 0.201 | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | |
PHAVU_001G054400g | 0.6401010 | 1 | 3 | NaN | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | |
S11_1967229 | PHAVU_011G023400g | 0.8740684 | 0 | 0 | 0.111 | tRNA-synt_1 (PF00133.26) | tRNA-synt_1 (PF00133.26) | Anticodon_1 (PF08264.17) |
PHAVU_011G022900g | 0.7721310 | 7 | 0 | 0.163 | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | ABC2_membrane (PF01061.28) | |
PHAVU_011G023900g | 0.7690604 | 0 | 0 | 0.015 | DDT (PF02791.21) | DDT (PF02791.21) | PTM_DIR17_Tudor (PF21743.1) | |
S11_9666528 | PHAVU_009G022500g | 0.5583961 | 0 | 0 | NaN | DUF659 (PF04937.19) | DUF659 (PF04937.19) | |
S11_38448497 | PHAVU_010G063000g | 0.9913740 | 0 | Y | NaN | NB-ARC (PF00931.26) | NB-ARC (PF00931.26) | LRR_4 (PF12799.11) |
S1_5502834 | PHAVU_009G092900g | 0.7535169 | 1 | Y | NaN | Pkinase (PF00069.29) | PK_Tyr_Ser-Thr (PF07714.21) | B_lectin (PF01453.28) |
S11_7240334 | PHAVU_011G078200g | 0.573563 | 0 | 0 | NaN | Adaptin_N (PF01602.22) | Cnd1 (PF12717.9) | Cnd1 (PF12717.9) |